Category: Slurm

When resources that you need for running your computing job are not available, you can still submit your resource allocation request so that your request will be put in the corresponding first-come, first-served queue (Slurm partition). And you can receive …

Receive Email Notifications of Your Slurm Jobs 🔒 Read More »

Note: This page will pull up-to-date information from the cluster. After start a Slurm session, if you run the following commands: source /opt/scripts/user/anaconda3-2023.03.init.sh conda env list You’ll see the following environments: After start a Slurm session, if you run the …

Python environments on the cluster 🔒 Read More »

After you connect to the head node, you can start a Slurm session using the following command, for example: srun -c 12 –x11 –pty bash -i Then run the following commands to set up the environment: module load nodejs module …

Use fMRIPrep on Cluster Read More »

“gpudebug” partition is for debugging GPU applications only. A “gpudebug” command is available for starting a Slurm session. The following command (email address is optional) will get you a Slurm session with 12 CPU cores, 12GB CPU memory and 1 …

Start a GPU Slurm session Read More »

Please be noted that SUMA (suma) won’t run when connecting to the cluster using X2Go, so we have to use ssh (Linux / MacOS users) or git bash (Windows users) to connect to the cluster if we need to run …

Run AFNI on Cluster Read More »

Note: you need to sign into the Psychology cluster (new, neurocomp0) to run the following commands. “R/3.5.3” module is required for running FIX jobs. To load “R/3.5.3” module, please run the following command: module load R/3.5.3

When you start a GUI Matlab session on the cluster, you may see the following warning: Warning: MATLAB has disabled some advanced graphics rendering features by switching to software OpenGL.This can also cause errors when you use some Matlab programs …

MATLAB OpenGL Warning Read More »

With Python 2 end of life on January 1, 2020, there are no guarantees that Python 2 developers and Python 2 package developers will fix Python 2 bugs or security holes. However, Python 2 and Anaconda 2 will still be …

“module load” a Python environment Read More »

A MacOS user may get an error message when starts FSLeyes (fsleyes) program on the PSY cluster: Gdk-ERROR **: The program ‘fsleyes’ received an X Window System error. This probably reflects a bug in the program. The error was ‘BadValue …

MacOS – XQuartz – FSLeyes (fsleyes) – received an X Window System error Read More »

Once you sign into the UTSC Psychology research cluster using X2Go, you can follow the following instructions to start a GUI session by enabling X Forwarding (–x11). Open a terminal Run srun command to start a GUI session on the …

Start a GUI Interactive Session through X2Go Read More »