Category: Software

After you connect to the head node, you can start a Slurm session using the following command, for example: srun -c 12 –x11 –pty bash -i Then run the following commands to set up the environment: module load nodejs module …

Use fMRIPrep on Cluster Read More »

Please be noted that SUMA (suma) won’t run when connecting to the cluster using X2Go, so we have to use ssh (Linux / MacOS users) or git bash (Windows users) to connect to the cluster if we need to run …

Run AFNI on Cluster Read More »

Note: you need to sign into the Psychology cluster (new, neurocomp0) to run the following commands. “R/3.5.3” module is required for running FIX jobs. To load “R/3.5.3” module, please run the following command: module load R/3.5.3

A MacOS user may get an error message when starts FSLeyes (fsleyes) program on the PSY cluster: Gdk-ERROR **: The program ‘fsleyes’ received an X Window System error. This probably reflects a bug in the program. The error was ‘BadValue …

MacOS – XQuartz – FSLeyes (fsleyes) – received an X Window System error Read More »

X2Go is a Remote Desktop solution for connecting to Linux servers. X2Go Client can be installed on Windows, MacOS or Linux systems. X2Go can keep your GUI sessions to the Linux servers alive if you don’t sign out even if …

Connecting to Cluster Using X2Go Read More »

Note: you need to sign into the Psychology cluster (new, neurocomp0) to run the following commands. 1) List available modules module avail 2) List loaded modules module list 3) Example – load a module module load python/anaconda3 4) Example – …

Using Environment Modules Read More »